ALL:
Microbes Dieases Diseases_id Changes Referances_pmid
Actinobacteria Obesity DOID:9970 Increase 26139477
Clostridiaceae Crohn's disease (CD) DOID:8778 Decrease 29194468
Clostridiales human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Clostridium autism spectrum disorder DOID:0060041 Decrease 28938872
Clostridium citroniae patients undergoing peritoneal dialysis DOID:0080928 Decrease 28931089
Clostridium hathewayi patients undergoing peritoneal dialysis DOID:0080928 Decrease 28931089
Clostridium sp. 29 human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Clostridium sp. 6 human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Clostridium sp. Clone-24 human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Clostridium sp. Clone-24 human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Clostridium sp. Clone-33 human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Actinomyces Crohn's disease (CD) DOID:8778 Increase 29194468
Collinsella Helicobacter pylori infection DOID:12638 Decrease 20352091
Collinsella aerofaciens Colorectal cancer DOID:9256 Increase 7574628
Collinsella aerofaciens Irritable bowel syndrome (IBS) DOID:9778 Decrease 17631127
Comamonas Colorectal cancer DOID:9256 Increase 26238090
Coprococcus Colorectal cancer DOID:9256 Increase 26238090
Coprococcus multiple sclerosis DOID:2377 Increase 25775034
Coprococcus comes Inflammatory bowel disease (IBD) DOID:0050589 Decrease 28039159
Coriobacteriaceae human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Coriobacteriales human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Desulfovibrio human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Actinomyces microscopic colitis DOID:0060182 Decrease 30324555
Desulfovibrio sp. 6 human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Desulfovibrionaceae Crohn's disease (CD) DOID:8778 Decrease 29194468
Desulfovibrionaceae human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Desulfovibrionales human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Eggerthella human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Enhydrobacter Colorectal cancer DOID:9256 Increase 26238090
Enterobacter autism spectrum disorder DOID:0060041 Decrease 28938872
Enterobacteriaceae Crohn's disease (CD) DOID:8778 Increase 29194468
Enterobacteriaceae incertae sedis metabolic syndrome DOID:0060611 Decrease 29998997
Enterococcaceae Crohn's disease (CD) DOID:8778 Increase 29194468
Actinomycetaceae Crohn's disease (CD) DOID:8778 Increase 29194468
Enterococcus Colorectal cancer DOID:9256 Increase 26238090
Enterococcus Crohn's disease (CD) DOID:8778 Increase 20735782
Enterococcus faecalis Liver cirrhosis DOID:5082 Increase 21574172
Enterococcus faecium Crohn's disease (CD) DOID:8778 Increase 20722058
Enterococcus sp. Helicobacter pylori infection DOID:12638 Increase 20352091
Epilithonimonas Colorectal cancer DOID:9256 Increase 26238090
Erysipelotrichaceae incertae sedis metabolic syndrome DOID:0060611 Increase 29998997
Escherichia coli Crohn's disease (CD) DOID:8778 Increase 20722058
Escherichia coli Eczema DOID:9123 Increase 17047098
Actinomycetales human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Escherichia coli Inflammatory bowel disease (IBD) DOID:0050589 Increase 26261163
Escherichia coli Crohn's disease (CD) DOID:8778 Decrease 26142465
Escherichia/Shigella sp. autism spectrum disorder DOID:0060041 Decrease 28938872
Escherichia/Shigella sp. Colorectal cancer DOID:9256 Increase 26238090
Eubacterium eligens human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Eubacterium limosum Cystic fibrosis DOID:1485 Decrease 29232848
Agrobacterium tumefaciens Cancer DOID:162 Increase 23347418
Faecalibacterium microscopic colitis DOID:0060182 Decrease 30324555
Faecalibacterium multiple sclerosis DOID:2377 Increase 25775034
Faecalibacterium prausnitzii Atopic dermatitis DOID:3310 Increase 26431583
Faecalibacterium prausnitzii Breast cancer DOID:1612 Decrease 28094541
Faecalibacterium prausnitzii Crohn's disease (CD) DOID:8778 Decrease 22102318
Faecalibacterium prausnitzii Cystic fibrosis DOID:1485 Decrease 29232848
Akkermansia muciniphila Colorectal cancer DOID:9256 Increase 23940645
Faecalibacterium prausnitzii Inflammatory bowel disease (IBD) DOID:0050589 Decrease 19235886
Faecalibacterium prausnitzii Liver cirrhosis DOID:5082 Decrease 25079328
Faecalibacterium prausnitzii Type 2 diabetes DOID:9352 Decrease 20876719
Faecalibacterium prausnitzii Ulcerative colitis DOID:8577 Decrease 27833384
Faecalibacterium prausnitzii human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Firmicutes abdominal dysfunction DOID:14221 Increase 27208120
Akkermansia muciniphila Colorectal cancer DOID:9256 Increase 28341746
Firmicutes autism spectrum disorder DOID:0060041 Decrease 28938872
Firmicutes Colorectal cancer DOID:9256 Increase 26238090
Firmicutes Crohn's disease (CD) DOID:8778 Increase 26142465
Firmicutes Obesity DOID:9970 Decrease 26139477
Flavobacteria Colorectal cancer DOID:9256 Increase 26238090
Flavobacterium Colorectal cancer DOID:9256 Increase 26238090
Flavonifractor plautii human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Fusobacteria Colorectal cancer DOID:9256 Increase 26238090
Fusobacterium Colorectal cancer DOID:9256 Increase 26238090
Gammaproteobacteria Colorectal cancer DOID:9256 Increase 26238090
Akkermansia muciniphila Crohn's disease (CD) DOID:8778 Decrease 20648002
Helicobacter pylori Allergic asthma DOID:9415 Increase 22971068
Helicobacter pylori Allergy DOID:3044 Decrease 17452546
Helicobacter pylori Asthma DOID:2841 Decrease 17452546
Helicobacter pylori Duodenal ulcer DOID:1724 Increase 9863476
Helicobacter pylori Gastric ulcer DOID:10808 Increase 9863476
Helicobacter pylori Gastro-oesophageal reflux DOID:8534 Decrease 9863476
Janthinobacterium Colorectal cancer DOID:9256 Increase 26238090
Klebsiella Crohn's disease (CD) DOID:8778 Increase 29194468
Klebsiella pneumoniae Necrotizing Enterocolitis DOID:8677 Decrease 19369970
Lachnospiraceae human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Akkermansia muciniphila Nonalcoholic fatty liver disease (NFLD) DOID:0080208 Decrease 28705785
Lachnospiraceae human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Lachnospiraceae human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Lactobacillus fermentum Crohn's disease (CD) DOID:8778 Increase 20848492
Lactobacillus fermentum Cystic fibrosis DOID:1485 Decrease 29232848
Lactobacillus mucosae Cystic fibrosis DOID:1485 Increase 29232848
Lactobacillus mucosae Parkinson's disease (PD) DOID:14330 Increase 28429209
Lactobacillus reuteri Cystic fibrosis DOID:1485 Increase 29232848
Lactobacillus reuteri Nonalcoholic fatty liver disease (NFLD) DOID:0080208 Increase 28705785
Lactonifactor longoviformis Breast cancer DOID:1612 Decrease 28094541
Mogibacteriaceae incertae sedis metabolic syndrome DOID:0060611 Decrease 29998997
Acinetobacter Colorectal cancer DOID:9256 Increase 26238090
Akkermansia muciniphila Ulcerative colitis DOID:8577 Decrease 20648002
Moraxellaceae metabolic syndrome DOID:0060611 Increase 29998997
Nesterenkonia Colorectal cancer DOID:9256 Increase 26238090
Nevskia Colorectal cancer DOID:9256 Increase 26238090
Odoribacter splanchnicus Liver cirrhosis DOID:5082 Decrease 25079328
Paludibacter sp. human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Papillibacter cinnamivorans human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Parabacteroides human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Parabacteroides distasonis Liver cirrhosis DOID:5082 Decrease 25079328
Parabacteroides merdae Liver cirrhosis DOID:5082 Decrease 25079328
Pedobacter Colorectal cancer DOID:9256 Increase 26238090
Alcaligenaceae Crohn's disease (CD) DOID:8778 Decrease 29194468
Peptostreptococcaceae incertae sedis autism spectrum disorder DOID:0060041 Decrease 28938872
Peptostreptococcus Colorectal cancer DOID:9256 Increase 26238090
Planococcaceae Crohn's disease (CD) DOID:8778 Increase 29194468
Porphyromonas gingivalis Parkinson's disease (PD) DOID:14330 Increase 9495612
Prevotella autism spectrum disorder DOID:0060041 Increase 28938872
Prevotella human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Prevotella copri Parkinson's disease (PD) DOID:14330 Decrease 28429209
Prevotella copri Rheumatoid arthrits DOID:7148 Increase 24192039
Prevotella copri patients undergoing peritoneal dialysis DOID:0080928 Increase 28931089
Prevotella_9 Constipation DOID:2089 Increase 29340896
Alistipes indistinctus patients undergoing peritoneal dialysis DOID:0080928 Decrease 28931089
Prevotellaceae human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Propionibacterium Colorectal cancer DOID:9256 Increase 26238090
Proteobacteria autism spectrum disorder DOID:0060041 Decrease 28938872
Proteobacteria Colorectal cancer DOID:9256 Increase 26238090
Proteobacteria Helicobacter pylori infection DOID:12638 Increase 20352091
Pseudomonadales human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Pseudomonas Colorectal cancer DOID:9256 Increase 26238090
Pseudomonas human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Pseudomonas aeruginosa Cystic fibrosis DOID:1485 Increase 31857448
Alistipes putredinis Liver cirrhosis DOID:5082 Decrease 25079328
Pseudomonas aeruginosa Induces host immune cell death DOID:417 Increase 30510173
Pseudomonas aeruginosa Irritable bowel syndrome (IBS) DOID:9778 Increase 20947663
Psychrobacter Colorectal cancer DOID:9256 Increase 26238090
Rahnella Colorectal cancer DOID:9256 Increase 26238090
Rhizobiales metabolic syndrome DOID:0060611 Decrease 29998997
Rhizobium Colorectal cancer DOID:9256 Increase 26238090
Rhodococcus Colorectal cancer DOID:9256 Increase 26238090
Roseburia hominis Inflammatory bowel disease (IBD) DOID:0050589 Decrease 28039159
Roseburia hominis Liver cirrhosis DOID:5082 Decrease 25079328
Roseburia intestinalis Breast cancer DOID:1612 Increase 28094541
Alistipes senegalensis human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Roseburia intestinalis Inflammatory bowel disease (IBD) DOID:0050589 Decrease 28039159
Roseburia intestinalis Liver cirrhosis DOID:5082 Decrease 25079328
Roseburia intestinalis human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Roseburia inulinivorans human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Ruminococcaceae Crohn's disease (CD) DOID:8778 Decrease 29194468
Ruminococcus bromii Crohn's disease (CD) DOID:8778 Decrease 20848492
Ruminococcus bromii Irritable bowel syndrome (IBS) DOID:9778 Increase 20014457
Ruminococcus bromii Parkinson's disease (PD) DOID:14330 Increase 28429209
Ruminococcus flavefaciens human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Alphaproteobacteria Colorectal cancer DOID:9256 Increase 26238090
Ruminococcus gauvreauii patients undergoing peritoneal dialysis DOID:0080928 Decrease 28931089
Salmonella typhimurium Typhoid fever DOID:13258 Increase 25458731
Selenomonadales human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Shigella flexneri Crohn's disease (CD) DOID:8778 Increase 20848492
Solobacterium human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Solobacterium moorei patients undergoing peritoneal dialysis DOID:0080928 Decrease 28931089
Sphingobacteria Colorectal cancer DOID:9256 Increase 26238090
Alphaproteobacteria metabolic syndrome DOID:0060611 Increase 29998997
Sphingomonadales human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Sphingomonas Colorectal cancer DOID:9256 Increase 26238090
Staphylococcus aureus Atopic dermatitis DOID:3310 Decrease 22310478
Staphylococcus aureus Cystic fibrosis DOID:1485 Increase 18077362
Staphylococcus aureus Guttate psoriasis DOID:8893 Increase 10671976
Staphylococcus aureus Obesity DOID:9970 Increase 18326589
Stenotrophomonas Colorectal cancer DOID:9256 Increase 26238090
Streptococcaceae Crohn's disease (CD) DOID:8778 Increase 29194468
Streptococcus Crohn's disease (CD) DOID:8778 Increase 29194468
Streptococcus human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Bacilli microscopic colitis DOID:0060182 Increase 30324555
Streptococcus parasanguinis Liver cirrhosis DOID:5082 Increase 25079328
Streptococcus salivarius Liver cirrhosis DOID:5082 Increase 25079328
Turicibacteraceae Crohn's disease (CD) DOID:8778 Decrease 29194468
unclassified Clostridiales human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
unclassified Lachnospiraceae Helicobacter pylori infection DOID:12638 Increase 20352091
Veillonella Crohn's disease (CD) DOID:8778 Increase 29194468
Veillonella parvula Inflammatory bowel disease (IBD) DOID:0050589 Increase 28039159
Veillonella parvula Liver cirrhosis DOID:5082 Increase 25079328
Vibrio harveyi Cholera DOID:1498 Increase 18598639 
Vibrio vulnificus Leg gangrene DOID:9159 Increase 15496235 
Bacillus Colorectal cancer DOID:9256 Increase 26238090
Yersinia enterocolitica Yersiniosis DOID:3482 Increase 22572658
Bacillus sp. human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Acinetobacter metabolic syndrome DOID:0060611 Decrease 29998997
Bacteroidaceae abdominal dysfunction DOID:14221 Decrease 27208120
Bacteroidaceae human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Bacteroidales bacterium human immunodeficiency virus infectious disease DOID:526 Decrease 28362071
Bacteroidales incertae sedis metabolic syndrome DOID:0060611 Decrease 29998997
Bacteroides autism spectrum disorder DOID:0060041 Increase 28938872
Bacteroides Crohn's disease (CD) DOID:8778 Increase 26142465
Bacteroides eggerthii Liver cirrhosis DOID:5082 Decrease 25079328
Bacteroides fragilis Crohn's disease (CD) DOID:8778 Decrease 16188921
Bacteroides fragilis Parkinson's disease (PD) DOID:14330 Decrease 26539989
Acinetobacter incertae sedis metabolic syndrome DOID:0060611 Increase 29998997
Bacteroides fragilis Type 1 diabetes DOID:9744 Decrease 20613793
Bacteroides ovatus Crohn's disease (CD) DOID:8778 Increase 18401439
Bacteroides ovatus Irritable bowel syndrome (IBS) DOID:9778 Decrease 21073731
Bacteroides ovatus Type 1 diabetes DOID:9744 Increase 20613793
Bacteroides ovatus Ulcerative colitis DOID:8577 Decrease 21073731
Bacteroides thetaiotaomicron Inflammatory bowel disease (IBD) DOID:0050589 Decrease 28039159
Bacteroides thetaiotaomicron Type 1 diabetes DOID:9744 Increase 20613793
Bacteroides uniformis Crohn's disease (CD) DOID:8778 Decrease 18401439
Bacteroides uniformis Irritable bowel syndrome (IBS) DOID:9778 Decrease 21073731
Actinobacteria autism spectrum disorder DOID:0060041 Decrease 28938872
Bacteroides uniformis Liver cirrhosis DOID:5082 Decrease 25079328
Bacteroides uniformis Type 1 diabetes DOID:9744 Increase 20613793
Bacteroides uniformis Ulcerative colitis DOID:8577 Decrease 21073731
Bacteroides vulgatus Crohn's disease (CD) DOID:8778 Increase 18401439
Bacteroides vulgatus Inflammatory bowel disease (IBD) DOID:0050589 Decrease 28039159
Bacteroides vulgatus Irritable bowel syndrome (IBS) DOID:9778 Decrease 21073731
Bacteroides vulgatus Type 1 diabetes DOID:9744 Decrease 20613793
Bacteroides vulgatus Type 2 diabetes DOID:9352 Decrease 20087741
Actinobacteria Colorectal cancer DOID:9256 Increase 26238090
Bacteroides vulgatus Ulcerative colitis DOID:8577 Decrease 21073731
Bacteroidetes autism spectrum disorder DOID:0060041 Increase 28938872
Bacteroidetes Colorectal cancer DOID:9256 Increase 26238090
Betaproteobacteria Colorectal cancer DOID:9256 Increase 26238090
Bifidobacteriaceae Crohn's disease (CD) DOID:8778 Decrease 29194468
Bifidobacterium autism spectrum disorder DOID:0060041 Decrease 28938872
Bifidobacterium Crohn's disease (CD) DOID:8778 Increase 20735782
Bifidobacterium Helicobacter pylori infection DOID:12638 Decrease 20352091
Bifidobacterium Obesity DOID:9970 Increase 26139477
Bifidobacterium adolescentis Asthma DOID:2841 Decrease 26840903
Actinobacteria Crohn's disease (CD) DOID:8778 Increase 26142465
Bifidobacterium adolescentis Inflammatory bowel disease (IBD) DOID:0050589 Decrease 28039159
Bifidobacterium animalis patients undergoing peritoneal dialysis DOID:0080928 Increase 28931089
Bifidobacterium bifidum Cystic fibrosis DOID:1485 Decrease 29232848
Bifidobacterium bifidum Inflammatory bowel disease (IBD) DOID:0050589 Decrease 28039159
Bifidobacterium bifidum Ulcerative colitis DOID:8577 Decrease 27604252
Bifidobacterium breve Celiac disease DOID:10608 Increase 29458413
Bifidobacterium breve Cystic fibrosis DOID:1485 Increase 29232848
Bifidobacterium catenulatum Irritable bowel syndrome (IBS) DOID:9778 Decrease 15667495
Bifidobacterium longum Celiac disease DOID:10608 Decrease 29458413
Actinobacteria Helicobacter pylori infection DOID:12638 Decrease 20352091
Bifidobacterium longum Cystic fibrosis DOID:1485 Decrease 29232848
Bifidobacterium longum Inflammatory bowel disease (IBD) DOID:0050589 Decrease 28039159
Bifidobacterium longum Type 1 diabetes DOID:9744 Increase 26891226
Bifidobacterium pseudocatenulatum Cystic fibrosis DOID:1485 Decrease 29232848
Bifidobacterium sp. Obesity DOID:9970 Increase 28596023
Bilophila wadsworthia Inflammatory bowel disease (IBD) DOID:0050589 Decrease 28039159
Bilophila wadsworthia Liver cirrhosis DOID:5082 Decrease 25079328
Blautia Obesity DOID:9970 Decrease 26139477
Blautia coccoides Breast cancer DOID:1612 Decrease 28094541
Blautia coccoides Inflammatory bowel disease (IBD) DOID:0050589 Decrease 28039159
Actinobacteria Obesity DOID:9970 Increase 28596023
Blautia coccoides Parkinson's disease (PD) DOID:14330 Decrease 26539989
Blautia sp. human immunodeficiency virus infectious disease DOID:526 Increase 28362071
Brevundimonas Colorectal cancer DOID:9256 Increase 26238090
Brochothrix Colorectal cancer DOID:9256 Increase 26238090
Buttiauxella Colorectal cancer DOID:9256 Increase 26238090
Butyricicoccus pullicaecorum Inflammatory bowel disease (IBD) DOID:0050589 Decrease 28039159
Carnobacterium Colorectal cancer DOID:9256 Increase 26238090
Caulobacter Colorectal cancer DOID:9256 Increase 26238090
Caulobacter crescentus Diarrhea DOID:13250 Increase 28418382
Chromobacterium violaceum Pneumonia DOID:552 Increase 32818399
Acidovorax Colorectal cancer DOID:9256 Increase 26238090